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2022
Cai T
,
Abbu KAlyssa
,
Liu Y
,
Xie L
. 2022.
DeepREAL: a deep learning powered multi-scale modeling framework for predicting out-of-distribution ligand-induced GPCR activity.
.
Bioinformatics. 38(9):2561-2570.
Liu Y
,
Lim H
,
Xie L
. 2022.
Exploration of chemical space with partial labeled noisy student self-training and self-supervised graph embedding.
.
BMC Bioinformatics. 23(Suppl 3):158.
Dong Q
,
Gentry NW
,
McMahon T
,
Yamazaki M
,
Benitez-Rivera L
,
Wang T
,
Gan L
,
Ptáček L
,
Fu Y-H
. 2022.
Familial natural short sleep mutations reduce Alzheimer pathology in mice.
.
iScience. 25(4):103964.
Chaudry O
,
Ndukwe K
,
Xie L
,
Figueiredo-Pereira M
,
Serrano P
,
Rockwell P
. 2022.
Females exhibit higher GluA2 levels and outperform males in active place avoidance despite increased amyloid plaques in TgF344-Alzheimer's rats.
.
Sci Rep. 12(1):19129.
Xie YXue
,
Naseri NN
,
Fels J
,
Kharel P
,
Na Y
,
Lane D
,
Burré J
,
Sharma M
. 2022.
Lysosomal exocytosis releases pathogenic α-synuclein species from neurons in synucleinopathy models.
.
Nat Commun. 13(1):4918.
Wang C
,
Fan L
,
Khawaja RR
,
Liu B
,
Zhan L
,
Kodama L
,
Chin M
,
Li Y
,
Le D
,
Zhou Y
et al.
. 2022.
Microglial NF-κB drives tau spreading and toxicity in a mouse model of tauopathy.
.
Nat Commun. 13(1):1969.
Kuo S-H
,
Tasset I
,
Cheng MM
,
Diaz A
,
Pan M-K
,
Lieberman OJ
,
Hutten SJ
,
Alcalay RN
,
Kim S
,
Ximénez-Embún P
et al.
. 2022.
Mutant glucocerebrosidase impairs α-synuclein degradation by blockade of chaperone-mediated autophagy.
.
Sci Adv. 8(6):eabm6393.
Xia D
,
Lianoglou S
,
Sandmann T
,
Calvert M
,
Suh JH
,
Thomsen E
,
Dugas J
,
Pizzo ME
,
DeVos SL
,
Earr TK
et al.
. 2022.
Novel App knock-in mouse model shows key features of amyloid pathology and reveals profound metabolic dysregulation of microglia.
.
Mol Neurodegener. 17(1):41.
Blackwell DJ
,
Faggioni M
,
Wleklinski MJ
,
Gomez-Hurtado N
,
Venkataraman R
,
Gibbs CE
,
Baudenbacher FJ
,
Gong S
,
Fishman GI
,
Boyle PM
et al.
. 2022.
The Purkinje-myocardial junction is the anatomical origin of ventricular arrhythmia in CPVT.
.
JCI Insight.
Hardwick SA
,
Hu W
,
Joglekar A
,
Fan L
,
Collier PG
,
Foord C
,
Balacco J
,
Lanjewar S
,
Sampson MMcGuirk
,
Koopmans F
et al.
. 2022.
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.
.
Nat Biotechnol.
Liu Q
,
Lee B
,
Xie L
. 2022.
Small molecule modulation of microbiota: a systems pharmacology perspective.
.
BMC Bioinformatics. 23(Suppl 3):403.
Carnazza KE
,
Komer LE
,
Xie YXue
,
Pineda A
,
Briano JAntonio
,
Gao V
,
Na Y
,
Ramlall T
,
Buchman VL
,
Eliezer D
et al.
. 2022.
Synaptic vesicle binding of α-synuclein is modulated by β- and γ-synucleins.
.
Cell Rep. 39(2):110675.
Tracy TE
,
Madero-Pérez J
,
Swaney DL
,
Chang TS
,
Moritz M
,
Konrad C
,
Ward ME
,
Stevenson E
,
Huttenhain R
,
Kauwe G
et al.
. 2022.
Tau interactome maps synaptic and mitochondrial processes associated with neurodegeneration.
.
Cell. 185(4):712-728.e14.
Wallace CH
,
Oliveros G
,
Serrano PA
,
Rockwell P
,
Xie L
,
Figueiredo-Pereira M
. 2022.
Timapiprant, a prostaglandin D2 receptor antagonist, ameliorates pathology in a rat Alzheimer's model.
.
Life Sci Alliance. 5(12)
Yan Y
,
Wang X
,
Chaput D
,
Shin M-K
,
Koh Y
,
Gan L
,
Pieper AA
,
Woo J-AA
,
Kang DE
. 2022.
X-linked ubiquitin-specific peptidase 11 increases tauopathy vulnerability in women.
.
Cell. 185(21):3913-3930.e19.
2023
Luo W
,
Qu W
,
Gan L
. 2023.
The AD odyssey 2023: Tales of single cell.
.
Cell. 186(20):4257-4259.
Das M
,
Mao W
,
Voskobiynyk Y
,
Necula D
,
Lew I
,
Petersen C
,
Zahn A
,
Yu G-Q
,
Yu X
,
Smith N
et al.
. 2023.
Alzheimer risk-increasing TREM2 variant causes aberrant cortical synapse density and promotes network hyperexcitability in mouse models.
.
Neurobiol Dis. 186:106263.
Barnett D
,
Bohmbach K
,
Grelot V
,
Charlet A
,
Dallérac G
,
Ju YHa
,
Nagai J
,
Orr AG
. 2023.
Astrocytes as Drivers and Disruptors of Behavior: New Advances in Basic Mechanisms and Therapeutic Targeting.
.
J Neurosci. 43(45):7463-7471.
Licht-Murava A
,
Meadows SM
,
Palaguachi F
,
Song SC
,
Jackvony S
,
Bram Y
,
Zhou C
,
Schwartz RE
,
Froemke RC
,
Orr AL
et al.
. 2023.
Astrocytic TDP-43 dysregulation impairs memory by modulating antiviral pathways and interferon-inducible chemokines.
.
Sci Adv. 9(16):eade1282.
Amin S
,
Liu B
,
Gan L
. 2023.
Autophagy prevents microglial senescence.
.
Nat Cell Biol. 25(7):923-925.
Uekawa K
,
Hattori Y
,
Ahn SJi
,
Seo J
,
Casey N
,
Anfray A
,
Zhou P
,
Luo W
,
Anrather J
,
Park L
et al.
. 2023.
Border-associated macrophages promote cerebral amyloid angiopathy and cognitive impairment through vascular oxidative stress.
.
Mol Neurodegener. 18(1):73.
Samelson AJ
,
Ariqat N
,
McKetney J
,
Rohanitazangi G
,
Bravo CParra
,
Goodness D
,
Tian R
,
Grosjean P
,
Abskharon R
,
Eisenberg D
et al.
. 2023.
CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis.
.
bioRxiv.
Chen H
,
Fan L
,
Guo Q
,
Wong MYing
,
Yu F
,
Foxe N
,
Wang W
,
Nessim A
,
Carling G
,
Liu B
et al.
. 2023.
DAP12 deficiency alters microglia-oligodendrocyte communication and enhances resilience against tau toxicity.
.
Res Sq.
Garcia CP
,
Licht-Murava A
,
Orr AG
. 2023.
Effects of adenosine A2A receptors on cognitive function in health and disease.
.
Int Rev Neurobiol. 170:121-154.
Xie L
,
Xie L
. 2023.
Elucidation of genome-wide understudied proteins targeted by PROTAC-induced degradation using interpretable machine learning.
.
PLoS Comput Biol. 19(8):e1010974.
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